TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|299470283|emb|CBN79587.1| Selenoprotein W [Ectocarpus
siliculosus]
         (146 letters)

Database: genome_sili.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|299508033|emb|FN649734.1| Ectocarpus siliculosus strain Ec 32...   171   8e-43
gi|299508028|emb|FN649729.1| Ectocarpus siliculosus strain Ec 32...    29   5.0  
gi|299508036|emb|FN649737.1| Ectocarpus siliculosus strain Ec 32...    29   5.0  
gi|299508052|emb|FN649753.1| Ectocarpus siliculosus strain Ec 32...    29   6.5  
gi|299508059|emb|FN649760.1| Ectocarpus siliculosus strain Ec 32...    29   6.5  

>gi|299508033|emb|FN649734.1| Ectocarpus siliculosus strain Ec 32, whole
               genome shotgun sequence assembly, chromosome LG09
          Length = 6071967

 Score =  171 bits (433), Expect = 8e-43
 Identities = 83/85 (97%), Positives = 84/85 (98%)
 Frame = -1

Query: 62      EIMYCGGUGYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTR 121
               +IMYCGG GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTR
Sbjct: 3994335 QIMYCGG*GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTR 3994156

Query: 122     GQGRCEDPREVQALVDQIQKFLDSS 146
               GQGRCEDPREVQALVDQIQKFLDSS
Sbjct: 3994155 GQGRCEDPREVQALVDQIQKFLDSS 3994081



 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = -2

Query: 27      VSSLSAANRVDIRSLNASAGMSTTTAGRGEDVAEIEI 63
               V + SAANRVDIRSLNASAGMSTTTAGRGEDVAEIE+
Sbjct: 3995039 VGTKSAANRVDIRSLNASAGMSTTTAGRGEDVAEIEV 3994929



 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = -2

Query: 1       MRIALLSLAALRCSPFSATVQAFATPVSSL 30
               MRIALLSLAALRCSPFSATVQAFATPVSSL
Sbjct: 3995480 MRIALLSLAALRCSPFSATVQAFATPVSSL 3995391


>gi|299508028|emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole
               genome shotgun sequence assembly, chromosome LG04
          Length = 5529539

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 13      CSPFSATVQAFATPVSSLSAANRVDIRSLNASAGMSTTTAGR 54
               C+P  + V +  T   S SA +  D+ +L+ +A +++TTA R
Sbjct: 5406218 CAPTVSPVSSQETLAVSRSAVHAADLAALSLAAALASTTAAR 5406093


>gi|299508036|emb|FN649737.1| Ectocarpus siliculosus strain Ec 32, whole
               genome shotgun sequence assembly, chromosome LG12
          Length = 3842133

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
 Frame = -2

Query: 91      SFIQTEDPG----VTGRFEVVLRN----TGELLHSKKTRGQGRCEDP 129
               SFIQTE P     V G F +  +     T +L HS+ T  +GR +DP
Sbjct: 1616744 SFIQTEQPS*TLLVCGSFVIYRKRERRLTRDLHHSRPTDTRGRQDDP 1616604


>gi|299508052|emb|FN649753.1| Ectocarpus siliculosus strain Ec 32, whole
              genome shotgun sequence assembly, chromosome LG28
          Length = 1232018

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 8      LAALRCSPFSATVQAFATPVSSLSAANRVDIRSLNASAGMSTTTAGRGE 56
              +A L C P S  + +FA+PVS         + SL+ S   ST + GR E
Sbjct: 608596 VAVLSCLPHSHPLLSFASPVS---------LESLSRSRSCSTASLGRRE 608715


>gi|299508059|emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole
               genome shotgun sequence assembly, unassigned sequences LGUn
          Length = 58155991

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 68      GUGYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTG----ELLHSKKTRGQ 123
               G G +    +L  +   +  D++   +   PGVTG  EVV+R  G    +L   K  RG 
Sbjct: 3129572 GRGDLNLARQLVEEGANLAEDQVHREREAPPGVTGGAEVVVRAEGPLHLQLKRCKHGRGG 3129751

Query: 124     GRCEDPREVQALV 136
               G   D    +A+V
Sbjct: 3129752 GGYSDVNAYRAVV 3129790


  Database: genome_sili.fa
    Posted date:  Mar 11, 2011  1:31 PM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,866,652
Number of Sequences: 35
Number of extensions: 387004
Number of successful extensions: 2466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2382
Number of HSP's gapped (non-prelim): 383
length of query: 146
length of database: 65,311,373
effective HSP length: 102
effective length of query: 44
effective length of database: 65,307,803
effective search space: 2873543332
effective search space used: 2873543332
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)